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The fundamental problem of chemistry πŸ”—
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Much of chemistry is about understanding the fundamental forces that operate within and between molecules. These forces come in different flavors: strong covalent bonds, weak and strong hydrogen bonds, electrostatic interactions, weak multipolar interactions, hydrophobic effects. The net interaction or repulsion between two molecules results from the sum total of these forces, some of which may be attractive and others might be repulsive. Harness these forces and you can control the structure, function and properties of molecules ranging from those used for solar capture to those used as breakthrough anticancer drugs.

Here’s how the fundamental dilemma manifests itself in the control of all these interactions: it is next to impossible to perform controlled experiments that would allow one to methodically vary one of the interactions and see its effect on the overall behavior of the molecule. In a nutshell, the interactions are all correlated, sometimes intimately so, and it can be impossible to change one without changing the other.
And nobody wants to admit that we fundamentally do not exactly know what we are doing. If we do not accept this, we cannot then ask, well what IS the independent factor behind these other forces?
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